McCammon, J. Andrew : rechercher sur Z-Library

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1

The invisible dance of CRISPR-Cas9

Palermo, Giulia, Ricci, Clarisse G., McCammon, J. Andrew

Journal:

Année:

2019

Langue:

english

Fichier:

PDF, 1.14 MB

english, 2019

2

Deciphering Off-Target Effects in CRISPR-Cas9 through Accelerated Molecular Dynamics

Ricci, Clarisse G., Chen, Janice S., Miao, Yinglong, Jinek, Martin, Doudna, Jennifer A., McCammon, J. Andrew, Palermo, Giulia

Journal:

ACS Central Science

Année:

2019

Langue:

english

Fichier:

PDF, 6.41 MB

english, 2019

3

Restrained molecular dynamics simulations of HIV-1 protease: The first step in validating a new target for drug design

Alexander L. Perryman, Jung-Hsin Lin, J. Andrew McCammon

Journal:

Année:

2006

Langue:

english

Fichier:

PDF, 804 KB

english, 2006

4

Molecular dynamics simulations of biomolecules

Karplus, Martin, McCammon, J. Andrew

Journal:

Natural Structural Biology

Année:

2002

Langue:

english

Fichier:

PDF, 1.09 MB

english, 2002

5

STRUCTURE-BASED DRUG DESIGN:Computational Advances

Marrone, Tami J., Briggs, and, James M., McCammon, J. Andrew

Journal:

Annual Review of Pharmacology

Année:

1997

Langue:

english

Fichier:

PDF, 149 KB

english, 1997

6

Poisson–Nernst–Planck equations for simulating biomolecular diffusion–reaction processes I: Finite element solutions

Benzhuo Lu, Michael J. Holst, J. Andrew McCammon, Y.C. Zhou

Journal:

Journal of Computational Physics

Année:

2010

Langue:

english

Fichier:

PDF, 1009 KB

english, 2010

7

Brownian Dynamics Simulations of Biological Molecules

Huber, Gary A., McCammon, J. Andrew

Journal:

Trends in Chemistry

Année:

2019

Langue:

english

Fichier:

PDF, 1.15 MB

english, 2019

8

Superoxide dismutase: Fluctuations in the structure and solvation of the active site channel studied by molecular dynamics simulation

Jian Shen, Shankar Subramaniam, Chung F. Wong, J. Andrew Mccammon

Journal:

Année:

1989

Langue:

english

Fichier:

PDF, 609 KB

english, 1989

9

Anti-insulin antibody structure and conformation. I. Molecular modeling and mechanics of an insulin antibody

Laura J. Nell, J. Andrew McCammon, Shankar Subramaniam

Journal:

Année:

1992

Langue:

english

Fichier:

PDF, 886 KB

english, 1992

10

Substrate steering by electrostatic fields of enzymes: visualization by computer graphics

Girija Ganti, J.Andrew McCammon

Journal:

Journal of Molecular Graphics

Année:

1986

Langue:

english

Fichier:

PDF, 470 KB

english, 1986

11

Optimization of doped silicon and germanium thermistors

Dan McCammon, Wei Cui, Mike Juda, Jiahong Zhang, Richard Kelley, Harvey Moseley, Caroline Stahle, Andrew Szymkowiak

Journal:

Journal of Low Temperature Physics

Année:

1993

Langue:

english

Fichier:

PDF, 58 KB

english, 1993

12

Browndye: A software package for Brownian dynamics

Gary A. Huber, J. Andrew McCammon

Journal:

Computer Physics Communications

Année:

2010

Langue:

english

Fichier:

PDF, 242 KB

english, 2010

13

Dynamics of folded proteins

McCammon, J. Andrew, Gelin, Bruce R., Karplus, Martin

Journal:

Année:

1977

Fichier:

PDF, 622 KB

1977

14

Molecular dynamics of ferrocytochrome c

Northrup, Scott H., Pear, Michael R., McCammon, J. Andrew, Karplus, Martin

Journal:

Année:

1980

Fichier:

PDF, 253 KB

1980

15

Internal mobility of ferrocytochrome c

Northrup, Scott H., Pear, Michael R., McCammon, J. Andrew, Karplus, Martin, Takano, Tsunehiro

Journal:

Année:

1980

Fichier:

PDF, 237 KB

1980

16

Towards an in vivo biologically inspired nanofactory

LeDuc, Philip R., Wong, Michael S., Ferreira, Placid M., Groff, Richard E., Haslinger, Kiryn, Koonce, Michael P., Lee, Woo Y., Love, J. Christopher, McCammon, J. Andrew, Monteiro-Riviere, Nancy A.

Journal:

Nature Nanotechnology

Année:

2007

Langue:

english

Fichier:

PDF, 810 KB

english, 2007

17

The Internal Dynamics of Globular Protein

Karplus, Martin, McCammon, J. Andrew, Peticolas, Warner L.

Journal:

Critical Reviews in Biochemistry and Molecular Biology

Année:

1981

Langue:

english

Fichier:

PDF, 4.49 MB

english, 1981

18

Accelerated molecular dynamics: A promising and efficient simulation method for biomolecules

Hamelberg, Donald, Mongan, John, McCammon, J. Andrew

Journal:

The Journal of Chemical Physics

Année:

2004

Langue:

english

Fichier:

PDF, 1.93 MB

english, 2004

19

Statistical mechanics and molecular dynamics in evaluating thermodynamic properties of biomolecular recognition

Wereszczynski, Jeff, McCammon, J. Andrew

Journal:

Quarterly Reviews of Biophysics

Année:

2012

Langue:

english

Fichier:

PDF, 373 KB

english, 2012

20

Molecular Dynamics of Acetylcholinesterase

Shen, Tongye, Tai, Kaihsu, Henchman, Richard H., McCammon, J. Andrew

Journal:

Accounts of Chemical Research

Année:

2002

Langue:

english

Fichier:

PDF, 719 KB

english, 2002

21

Molecular Dynamics: Survey of Methods for Simulating the Activity of Proteins

Adcock, Stewart A., McCammon, J. Andrew

Journal:

Chemical Reviews

Année:

2006

Langue:

english

Fichier:

PDF, 556 KB

english, 2006

22

CrystalDock: A Novel Approach to Fragment-Based Drug Design

Durrant, Jacob D., Friedman, Aaron J., McCammon, J. Andrew

Journal:

Journal of Chemical Information and Modeling

Année:

2011

Langue:

english

Fichier:

PDF, 942 KB

english, 2011

23

A comparative study of time dependent quantum mechanical wave packet evolution methods

Truong, Thanh N., Tanner, John J., Bala, Piotr, McCammon, J. Andrew, Kouri, Donald J., Lesyng, Bogdan, Hoffman, David K.

Journal:

The Journal of Chemical Physics

Année:

1992

Langue:

english

Fichier:

PDF, 898 KB

english, 1992

24

Brownian dynamics simulation of diffusion-influenced bimolecular reactions

Northrup, Scott H., Allison, Stuart A., McCammon, J. Andrew

Journal:

The Journal of Chemical Physics

Année:

1984

Langue:

english

Fichier:

PDF, 849 KB

english, 1984

25

P ROTEIN F LEXIBILITY AND C OMPUTER -A IDED D RUG D ESIGN

Wong, Chung F., McCammon, J. Andrew

Journal:

Annual Review of Pharmacology

Année:

2003

Langue:

english

Fichier:

PDF, 248 KB

english, 2003

26

How Does the cAMP-Dependent Protein Kinase Catalyze the Phosphorylation Reaction: An ab Initio QM/MM Study

Cheng, Yuhui, Zhang, Yingkai, McCammon, J. Andrew

Journal:

Journal of the American Chemical Society

Année:

2005

Langue:

english

Fichier:

PDF, 545 KB

english, 2005

27

The dynamic picture of protein structure

McCammon, J. Andrew, Karplus, Martin

Journal:

Accounts of Chemical Research

Année:

1983

Langue:

english

Fichier:

PDF, 970 KB

english, 1983

28

The structure of liquid water at an extended hydrophobic surface

Lee, Chyuan-Yih, McCammon, J. Andrew, Rossky, P. J.

Journal:

The Journal of Chemical Physics

Année:

1984

Langue:

english

Fichier:

PDF, 898 KB

english, 1984

29

Studying the affinity and kinetics of molecular association with molecular-dynamics simulation

Zhang, Yingkai, McCammon, J. Andrew

Journal:

The Journal of Chemical Physics

Année:

2003

Langue:

english

Fichier:

PDF, 396 KB

english, 2003

30

Variational Implicit-Solvent Modeling of Host–Guest Binding: A Case Study on Cucurbit[7]uril|

Zhou, Shenggao, Rogers, Kathleen E., de Oliveira, César Augusto F., Baron, Riccardo, Cheng, Li-Tien, Dzubiella, Joachim, Li, Bo, McCammon, J. Andrew

Journal:

Journal of Chemical Theory and Computation

Année:

2013

Langue:

english

Fichier:

PDF, 1.44 MB

english, 2013

31

How Can Hydrophobic Association Be Enthalpy Driven?

Setny, Piotr, Baron, Riccardo, McCammon, J. Andrew

Journal:

Journal of Chemical Theory and Computation

Année:

2010

Langue:

english

Fichier:

PDF, 2.30 MB

english, 2010

32

Variational Implicit Solvation with Poisson–Boltzmann Theory

Zhou, Shenggao, Cheng, Li-Tien, Dzubiella, Joachim, Li, Bo, McCammon, J. Andrew

Journal:

Journal of Chemical Theory and Computation

Année:

2014

Langue:

english

Fichier:

PDF, 4.06 MB

english, 2014

33

Water in Cavity−Ligand Recognition

Baron, Riccardo, Setny, Piotr, Andrew McCammon, J.

Journal:

Journal of the American Chemical Society

Année:

2010

Langue:

english

Fichier:

PDF, 3.34 MB

english, 2010

34

Dynamics and Calcium Association to the N-Terminal Regulatory Domain of Human Cardiac Troponin C: A Multiscale Computational Study

Lindert, Steffen, Kekenes-Huskey, Peter M., Huber, Gary, Pierce, Levi, McCammon, J. Andrew

Journal:

Journal of Physical Chemistry B

Année:

2012

Langue:

english

Fichier:

PDF, 5.13 MB

english, 2012

35

Memory kernels from molecular dynamics

Berkowitz, Max, Morgan, John D., Kouri, Donald J., McCammon, J. Andrew

Journal:

The Journal of Chemical Physics

Année:

1981

Langue:

english

Fichier:

PDF, 375 KB

english, 1981

36

Improved cryoEM-Guided Iterative Molecular Dynamics–Rosetta Protein Structure Refinement Protocol for High Precision Protein Structure Prediction

Lindert, Steffen, McCammon, J. Andrew

Journal:

Journal of Chemical Theory and Computation

Année:

2015

Langue:

english

Fichier:

PDF, 5.55 MB

english, 2015

37

Understanding the Origins of Bacterial Resistance to Aminoglycosides through Molecular Dynamics Mutational Study of the Ribosomal A-Site

Romanowska, Julia, McCammon, J. Andrew, Trylska, Joanna, Westhof, Eric

Journal:

PLoS Computational Biology

Année:

2011

Langue:

english

Fichier:

PDF, 1.54 MB

english, 2011

38

General trends of dihedral conformational transitions in a globular protein

Miao, Yinglong, Baudry, Jerome, Smith, Jeremy C., McCammon, J. Andrew

Journal:

Proteins: Structure, Function, and Bioinformatics

Année:

2016

Langue:

english

Fichier:

PDF, 854 KB

english, 2016

39

Autobiography of J. Andrew McCammon

McCammon, J. Andrew

Journal:

Journal of Physical Chemistry B

Année:

2016

Langue:

english

Fichier:

PDF, 198 KB

english, 2016

40

Hierarchical Orthogonal Matrix Generation and Matrix-Vector Multiplications in Rigid Body Simulations

Fang, Fuhui, Huang, Jingfang, Huber, Gary, McCammon, J. Andrew, Zhang, Bo

Journal:

SIAM Journal on Scientific Computing

Année:

2018

Langue:

english

Fichier:

PDF, 225 KB

english, 2018

41

Key role of the REC lobe during CRISPR–Cas9 activation by ‘sensing’, ‘regulating’, and ‘locking’ the catalytic HNH domain

Palermo, Giulia, Chen, Janice S., Ricci, Clarisse G., Rivalta, Ivan, Jinek, Martin, Batista, Victor S., Doudna, Jennifer A., McCammon, J. Andrew

Journal:

Quarterly Reviews of Biophysics

Année:

2018

Langue:

english

Fichier:

PDF, 841 KB

english, 2018

42

Computing ionization states of proteins with a detailed charge model

Antosiewicz, Jan, Briggs, James M., Elcock, Adrian H., Gilson, Michael K., McCammon, J. Andrew

Journal:

Journal of Computational Chemistry

Année:

1996

Langue:

english

Fichier:

PDF, 892 KB

english, 1996

43

Conformational sampling with Poisson-Boltzmann forces and a stochastic dynamics/Monte Carlo method: Application to alanine dipeptide

Smart, Jason L., Marrone, Tami J., McCammon, J. Andrew

Journal:

Journal of Computational Chemistry

Année:

1997

Langue:

english

Fichier:

PDF, 441 KB

english, 1997

44

Molecular dynamics of cryptophane and its complexes with tetramethylammonium and neopentane using a continuum solvent model

Potter, Michael J., Kirchhoff, Paul D., Carlson, Heather A., McCammon, J. Andrew

Journal:

Journal of Computational Chemistry

Année:

1999

Langue:

english

Fichier:

PDF, 373 KB

english, 1999

45

Study of global motions in proteins by weighted masses molecular dynamics: Adenylate kinase as a test case

Samir Elamrani, Michael B. Berry, George N. Phillips Jr., J. Andrew McCammon

Journal:

Proteins: Structure, Function, and Bioinformatics

Année:

1996

Langue:

english

Fichier:

PDF, 1.18 MB

english, 1996

46

Dynamical properties of fasciculin-2

Nathan A. Baker, Volkhard Helms, J. Andrew McCammon

Journal:

Proteins: Structure, Function, and Bioinformatics

Année:

1999

Langue:

english

Fichier:

PDF, 150 KB

english, 1999

47

Simulation of electrostatic and hydrodynamic properties of Serratia endonuclease

Jan Antosiewicz, Mitchell D. Miller, Kurt L. Krause, J. Andrew McCammon

Journal:

Année:

1997

Langue:

english

Fichier:

PDF, 133 KB

english, 1997

48

Correlation between rate of enzyme-substrate diffusional encounter and average Boltzmann factor around active site

Huan-Xiang Zhou, James M. Briggs, Sylvia Tara, J. Andrew McCammon

Journal:

Année:

1998

Langue:

english

Fichier:

PDF, 107 KB

english, 1998

49

Rapid binding of a cationic active site inhibitor to wild type and mutant mouse acetylcholinesterase: Brownian dynamics simulation including diffusion in the active site gorge

Sylvia Tara, Adrian H. Elcock, Paul D. Kirchhoff, James M. Briggs, Zoran Radic, Palmer Taylor, J. Andrew McCammon

Journal:

Année:

1998

Langue:

english

Fichier:

PDF, 133 KB

english, 1998

50

Phosphorylation stabilizes the N-termini of α-helices

Jason L. Smart, J. Andrew McCammon

Journal:

Année:

1999

Langue:

english

Fichier:

PDF, 297 KB

english, 1999